PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG613400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 371aa    MW: 38660.5 Da    PI: 4.947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG613400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12185227754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pavir.5NG613400.1.p 185 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 227
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16181245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-13185231No hitNo description
CDDcd048732.80E-5299340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDDSAPGKLD EIAGGGGASG DWSYLTSDGM ASGSFPLFPF PRDALSTPPS SASLLLSMDP  60
VALFDIHGAF PPPSSAAGGG GGSALPAFHD FTSNNPFDDA GQFLAAPPPA PAEQHQGHKG  120
GFLAPPPAPA FGIDWDDDDE IEHSVDASSM AITASMENAA GASTGGGGGG SGRGKKKGMP  180
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR INDLHNEIES  240
APSSSLVGPT SASFHPSTPT LQTFPGHVKE ELCPAAFPSP NGQQATVEVR MREGHAVNIH  300
MFCARRPGIL LSTMTALDGL GLDIEQAVIS CFNGFAMDVF RAEQCGDGPG LVPDEIKAVL  360
LHTAGLQNTM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192KKKGMPAKNLMAERRRRKK
2186193ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158940.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971151.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-103ICE1_ARATH; Transcription factor ICE1
TrEMBLK3XJ010.0K3XJ01_SETIT; Uncharacterized protein
STRINGSi001874m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-103bHLH family protein